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SCEC/CME Year 5 All Hands Meeting - July 17-18, 2006
Thanks to those of you that participated in the SCEC/CME 2006 All Hands Meeting. Presentation and demonstration materials from this meeting are posted on the meeting information page.
SCEC Digital Library - Ground Motion Data Access

Several new tools for accesing simulation data sets in the SRB are available:

  • LA Basin Ground Motion Interface: This interface provides access to a Basin Validation Group Simulation Data set.
  • TeraShake Simulations : This interface provides a map-based interface to the TeraShake simulation data sets.
  • Data Distribution System : This provides an non-map-based interface to both Basin Validation data and TeraShake data. The seismograms are provided as SAC files.

 

Divergence and Curl Source Code

An initial version of divergence and curl software is available. This code, written in C++ and built using gcc compilers, will calculate divergence and curl for 3 component volumetric data. The code was carefully validated by comparing it's results to Matlab results. This code is useful on systems where Matlab is not available.

There are two distributions. The first source distribution (50KB) contains the source code and makefile. The second full distribution (33MB) contains example data, Matlab scripts for comparison, and codes that will compare output files.

SOSA Version 1.0 Released
We're pleased to announce the release of a new software tool for researchers on the SCEC/CME project with the release of SOSA Version 1.0. Please visit the SOSA Web Site.

The SOSA application (Synthetic and Observed Seismogram Analysis) combines the common tasks of retrieving observed and synthetic seismograms and applying analysis routines into a single software application. The tool enables researchers to retrieve observed seismograms accessible through a DHI (Data Handling Interface) and seismograms saved locally or accessible through an SRB (Storage Resource Broker). Seismograms retrieved from any source can be processed together, allowing easy comparison between synthetics and observed seismograms. Built-in processing abilities are re-sampling, tapering, filtering, rotation, convolution with instrument response and correlation between seismograms; web services provide access to other processes. Scientists may save seismograms into SAC or mSEED format.
Saved seismograms include associated metadata that details the source(s) of the seismogram and history of processing.

As a beta release, this product is not without flaws. Our testing has not revealed any serious problems, however we are hoping that our beta users will provide feedback so we can make this a truly useful tool for the community. We welcome bug reports, functionality requests and general comments. For the quickest response, please send questions and comments to sosa@.iris.washington.edu. Also note SOSA does include a User's Guide and Tutorial, available online and also in the docs folder within the install directory.

SCEC/CME Project Manager Blog

For short notes on recent SCEC/CME Project activities, please see the SCEC/CME Project Manager Weblog:

 

SCEC/CME TeraShake Simulation News
Dear TeraShake Team (list included below!):

Marcio and I want to report on how the TeraShake results were received at the SCEC annual meeting in Palm Springs.

First of all we should point out that the meeting was attended by nearly 400 people, including practically all the best earthquake seismologists in the country (33 states) and several from abroad (9 countries). This is a VERY tough audience for this kind of work.....They positively loved it! The team was formally thanked by SCEC director Tom Jordan, who expressed the enthusiasm of the entire SCEC community.

Yesterday there was a press conference attended by all Palm Springs TV stations, and the majority of the LA TV stations, a Mexican station, as well as quite a number of newspaper reporters. We showed one of the movies that Amit had generated overnight, and this was quite a sensation. A number of meeting participants who had not attended the press conference told me that they had seen the movie on the 5 pm news, sometimes more than once. (I did not see it myself, being busy correcting an error made in building the base map!). Evidently several papers carried the story. The Palm Springs "Desert Sun" had a good story, that included accurate quotes. I will get copies of these stories and some of the video through SCEC when they have a minute to catch their breath!

Amit Chourasia ---who apparently does not need any sleep--- spent an enormous amount of effort in fixing the movies and generating high resolution movies. Marcio and I spent most of the day downloading them, getting the last one only 20 minutes before my afternoon presentation. That clinched it. Many people who had been skeptical of such large scale simulations came to us using words like "fantastic", "amazing", etc.....and of course we spent 3 hours after dinner giving private showings at the evening poster session.

This success is due mostly to the phenomenal team work that has taken place over the past few months. Since these activities are not always visible to outsiders, I thought I would share the summary that Marcio and I put together. This is best done through examples:

Kim made his AWM code freely available, and Steve and Geoff helped with understanding its workings and how best to validate the output.

The SDSC, scientific applications group led by Amit Majumdar, with support from Giri, Yifeng, Leesa helped with porting the code; parallelizing the calculation and the IO; and generalizing the code for scaling up to a large run. Robert Harkness offered invaluable insights regarding IO management.

Yifeng put in a huge amount of work --including nights and weekends over the summer-- to implement various substantial improvements to the code, that will benefit the SCEC community for years to come.

Geoff and Boris provided the checkpoint/restart capability, executed cross-validation runs using earlier versions, and together with David, helped define the metadata. Yuanfang integrated MD5 data fingerprinting and, together with Steve and Amit, the on-the-fly visualization library in the TeraShake code.

The Scientific Applications Group mentioned above, and the high-end systems group, with Patricia, Larry and Chris, executed DataStar benchmarks to ascertain the best resource configuration given the computing and IO characteristics of the desired run. Don Frederick took care of reserving these resources, both for the run itself and for the subsequent visualization.

Yifeng dimensioned the run; Larry mad sure that enough cache space on GPFS would be available; Don took care of the SAM-QFS cache; Tom provided support for the Sanergy client to access the SAMFS from the DataStar; George benchmarked and designed the archival process, ie the process of transferring data from GPFS to the SAM-QFS archive and conducting on-the-fly validations.

Special mention should be made of Bryan's fix to the dd client, that sped up the archival process enormously.

Nancy took on the task of identifying and allocating resources, and keeping the momentum through periodic meetings and telecons. ....and someone (Richard?) obviously did a great job of coordinating the flurry of activity between the various groups.

The run itself prompts me to acknowledge explicitly uncommon effort by several team members:

-- The run master has been Yifeng. He launched the job on Tuesday September 14, at 18:00, and, except for one shift covered by Giri, took care of the babysitting until Sunday, September 19, at 02:00.

-- George took care of draining the GPFS cache regularly, moving 43 Tbytes of data safely to archive storage, and registering the data with the SRB. That task was completed on Monday, September 20, a mere 36 hours after the end of the calculation. The support of the SRB group was critical in this achievement.

-- Amit started visualizing the data almost immediately, generating several intermediate animations that convinced us of the correctness of the simulation. This culminated in a huge effort after completion of the run, to produce a complete suite of animations from scratch using a corrected basemap, in time for the press conference and the SCEC session on ITR.

-- Yuanfang computed all the data products used in the specialized graphics to assess seismic hazards.

In the end Yifeng and Amit are to be singled out for extraordinary contribution to the ultimate success of this project. I speak for the entire SCEC ITR collaboration in thanking them especially.

...and all through the process-- from March 4 to September 22!-- ... Marcio and Phil have played a truly critical role in prodding us to keep moving forward, insuring that the lines of communication remained open, and that the right people got involved across the ITR collaboration. Without their calm and patient guidance through the process , we would not have reached our goal.

As those of you who remember me from the time I served on the NPACI EC (Reagan is one!) I have desired to see a large earthquake simulation for over a decade. This dream has been accomplished. I have to convey to you the enormous pleasure I have taken in participating in this effort, due to the obvious enthusiasm for the project that was so obvious among the entire team.

Already, many people have asked me what we will do next. It is very clear that the earthquake research community is now absolutely "taken" with the capability that has been demonstrated here. Many will want to participate. Everyone wants the movies on the web, and many want to know how to get to the archived output. Others want to team up on future simulations.

I suggest that we schedule an all-team post-mortem meeting where we review the lessons learned; identify ways to do it better, faster, and cheaper next time; identify follow-on work that we can facilitate, such as data mining by the community; and start planning the next few simulations, which are already being called for by leaders in earthquake research.

We have a lot of work in front of us. I look forward to it!

Warmest thanks and regards to all of you,

Bernard

Jean-Bernard Minster
Professor of Geophysics
WWW: http://igpp-sw.ucsd.edu/

Professor of Geophysics, Scripps Institution of Oceanography
Director, systemwide, Institute of Geophysics and Planetary Physics
University of California

PS: List of TeraShake team members and affilitations. These are the authors of the American Geophysical Union presentation scheduled for next December.

Kim B. Olsen (SDSU)
Bernard Minster (IGPP)
Reagan Moore (SDSC)
Steve Day (SDSU)
Phil Maechling (USC)
Tom Jordan (USC)
Marcio Faerman (SDSC)
Geoffrey Ely (IGPP)
Boris Shkoller (IGPP)
Carey Marcinkovich (EXxonMobil)
Jacobo Bielak (CMU)
David Okaya (USC)
Ralph Archuleta (UCSB)
Steve Cutchin (SDSC)
Amit Chourasia (SDSC)
George Kremenek (SDSC)
Yuanfang Hu (SDSC)
Arun Jagatheesan (SDSC)
Nancy Wilkins-Diehr (SDSC)
Richard Moore (SDSC)
Bryan Banister (SDSC)
Leesa Brieger (SDSC)
Amit Majumdar (SDSC)
Yifeng Cui (SDSC)
Giridhar Chukkapalli (SDSC)
Qiao Xin (SDSC)
Donald Thorp (SDSC)
Patricia Kovatch (SDSC)
Larry Diegel (SDSC)
Tom Sherwin (SDSC)
Christopher Jordan (SDSC)
Marcus Thiebaux (ISI)
Julio Lopez (CMU)


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The SCEC Community Modeling Environment (SCEC/CME) is funded by the National Science Foundation.